Partners in Time is very doable, but for now Bowser's Inside Story is impossible until DesSmuME gets better. I would start on it myself, but I wanted to try contacting the person known as Vice, who has been submitting nice big complete room rips to The Spriters Resource to see if he would like to make maps to submit here. Since contacting him is proving impossible, I'm might just go ahead and do it myself. M&L3 will be tricky in that all the levels are composed of 3D squares, meaning I could literally have to piece together everything manually or do a lot of screenshot editing.
Edit: Guess what? Excellent news! Thanks to much help from a friend, I ripped the JPG images from Ocarina of Time with a hex editor! Yay!